PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012571308.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family M-type_MADS
Protein Properties Length: 399aa    MW: 45797.2 Da    PI: 5.6952
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012571308.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF222.2e-071242144
                    HHHHHHHHHHHT-EEEEEEE-TTS CS
          SRF-TF 21 lKKAeELSvLCdaevaviifsstg 44
                    +KK +E+S+LC++e++ ii+ +++
  XP_012571308.1  1 MKKVNEISTLCGIEACAIIYDKNN 24
                    8*******************8877 PP

2SRF-TF534.3e-17195236344
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
          SRF-TF   3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 
                     i n+snr+ t+ kR+ g+lKK +ELS+LC+++++ ii+++++
  XP_012571308.1 195 IINHSNRKATYKKRKYGLLKKISELSILCGIDACAIIYGENN 236
                     779************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF003193.8E-5124IPR002100Transcription factor, MADS-box
CDDcd002661.22E-14157No hitNo description
SuperFamilySSF554553.66E-12166IPR002100Transcription factor, MADS-box
SMARTSM004323.6E-21185244IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.199185236IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-22185269IPR002100Transcription factor, MADS-box
CDDcd002664.95E-29186269No hitNo description
PRINTSPR004048.8E-10187207IPR002100Transcription factor, MADS-box
PfamPF003192.6E-15195236IPR002100Transcription factor, MADS-box
PRINTSPR004048.8E-10207222IPR002100Transcription factor, MADS-box
PRINTSPR004048.8E-10222243IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MKKVNEISTL CGIEACAIIY DKNNTQGEVW PSDSGVKSVL SRFMNLPEME RSKKMMDQEF  60
FLTQSIAKVY EQMKKQREET RKKEMASLIS QYVHTREFNG YLMSKNDLKD LSSLIDEGLK  120
KIEQTMTQMK IEGEEEVVNG AHTMNEVEGQ KNMQAMNEIE GMENIGHTQL GFVSEGDDHQ  180
VITFMARKKV KLAYIINHSN RKATYKKRKY GLLKKISELS ILCGIDACAI IYGENNPRAE  240
VWPSTIGARS VLSKFMRLPE LERRKKMVDL EGFLTQSIAK VQDSLKKQME ENQRKQMSYF  300
ISHFIHTGEY NPGNVNLNDL NDLTTIIDNN LKEIEGKLSS MEVVAEEETG NRVEPMHNHV  360
GVQERETNMN YAMKSDDEHL PLDLPFDDVN IDTNGLWSI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186208RKKVKLAYIINHSNRKATYKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012571308.10.0PREDICTED: uncharacterized protein LOC101511888
TrEMBLG7ZXK21e-69G7ZXK2_MEDTR; MADS-box transcription factor family protein
STRINGPOPTR_0005s00420.16e-51(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1816226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.23e-33M-type_MADS family protein